PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913061.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 381aa    MW: 42164.1 Da    PI: 9.0254
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913061.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-095177127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G +CkF+H+p
  XP_010913061.1 51 PGEPDCAYYIRTGLCRFGMTCKFNHPP 77
                    5789*********************97 PP

2zf-CCCH39.59.6e-1398122327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_010913061.1  98 QPECQYYLKTGTCKFGATCKFHHPK 122
                     799********************96 PP

3zf-CCCH36.49e-12144168327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  XP_010913061.1 144 EKECAYYLRTGQCKFGNTCKFHHPQ 168
                     679********************97 PP

4zf-CCCH40.73.8e-13304329227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ C+F+H++
  XP_010913061.1 304 DQPECQFYMKTGDCKFGAACRFHHPR 329
                     689*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00125077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5915078IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-65277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-55578IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33895123IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-695122IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5101121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5141168IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76302330IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5302329IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6305332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEYEGNGVHM HGARQPADVT EGSSSLEEEA IWQMNLRGSE LMESGPYPKR PGEPDCAYYI  60
RTGLCRFGMT CKFNHPPNRK MAIAAARIKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH  120
PKDKAGIAGR VQLNILGYPL RPNEKECAYY LRTGQCKFGN TCKFHHPQPS NAMVALRGSS  180
VYSPVHSPTI PGQQSYPGGL TNWSLSRASF IPSPRWQGPS SYAQLILPQG LVQVPGWNPY  240
PGQMGSSSPK SRQQTPGVAE YYSASRQSET SEGAQGTFSS YRLGSIPMGV YALQRENIFP  300
NRPDQPECQF YMKTGDCKFG AACRFHHPRE RLMPVPDCVL SPLGLPLRPI RNTSKILSNV  360
LEIRCFAAIA SIIQSIEALL C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913061.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLF6GX270.0F6GX27_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1